ScienceClaw

In the author's own words, from each skill's SKILL.md — showing the first 30 of 275 files.

• academic-literature-search

  No description in the SKILL.md.

  skills/academic-literature-search/SKILL.md on GitHub (opens in a new tab)

• adaptyv

  Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for be…

  skills/adaptyv/SKILL.md on GitHub (opens in a new tab)

• aeon

  This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series…

  skills/aeon/SKILL.md on GitHub (opens in a new tab)

• alphafold-database

  Access AlphaFold 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.

  skills/alphafold-database/SKILL.md on GitHub (opens in a new tab)

• anndata

  Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.

  skills/anndata/SKILL.md on GitHub (opens in a new tab)

• arboreto

  Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.

  skills/arboreto/SKILL.md on GitHub (opens in a new tab)

• article-writing

  Write articles, guides, blog posts, tutorials, newsletter issues, and other long-form content in a distinctive voice derived from supplied examples or brand guidance. Use when the user wants polished written content longer than a paragraph, especially when voice consistency, structure, and credibility matter.

  skills/article-writing/SKILL.md on GitHub (opens in a new tab)

• arxiv-search

  Search arXiv physics, math, and computer science preprints using natural language queries. Powered by Valyu semantic search.

  skills/arxiv-search/SKILL.md on GitHub (opens in a new tab)

• asta-corpus-search

  Search Allen AI's Asta Scientific Corpus (225M+ papers, 12M+ full-text, 2.4B+ citations) via MCP endpoint. Provides paragraph-level semantic search across full-text publications, citation graph traversal, and author analysis. Use as a complement to PubMed/OpenAlex/Semantic Scholar for deeper literature discovery, especially when full-text search or citation network analysis is needed. Requires AS…

  skills/asta-corpus-search/SKILL.md on GitHub (opens in a new tab)

• astropy

  Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve coordinate transformations, unit conversions, FITS file manipulation, cosmologi…

  skills/astropy/SKILL.md on GitHub (opens in a new tab)

• benchling-integration

  Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.

  skills/benchling-integration/SKILL.md on GitHub (opens in a new tab)

• longevity-scholar

  This skill should be used when users explicitly request academic papers, recent research, most cited research, or scholarly articles about longevity, aging, lifespan extension, or related topics. Triggers on phrases like "find papers on", "latest research about", "most cited studies on", or "academic literature about" in the context of longevity.

  skills/bioagent-longevity-scholar/SKILL.md on GitHub (opens in a new tab)

• bioinformatics

  No description in the SKILL.md.

  skills/bioinformatics/SKILL.md on GitHub (opens in a new tab)

• biomedical-search

  Complete biomedical information search combining PubMed, preprints, clinical trials, and FDA drug labels. Powered by Valyu semantic search.

  skills/biomedical-search/SKILL.md on GitHub (opens in a new tab)

• biomni

  Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS interpretation, rare disease diagnosis, or lab protocol optimization. Leverages LLM reasoning wi…

  skills/biomni/SKILL.md on GitHub (opens in a new tab)

• biopython

  Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.

  skills/biopython/SKILL.md on GitHub (opens in a new tab)

• biorxiv-database

  Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.

  skills/biorxiv-database/SKILL.md on GitHub (opens in a new tab)

• biorxiv-search

  Search bioRxiv biology preprints with natural language queries. Semantic search powered by Valyu.

  skills/biorxiv-search/SKILL.md on GitHub (opens in a new tab)

• bioservices

  Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.

  skills/bioservices/SKILL.md on GitHub (opens in a new tab)

• brenda-database

  Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.

  skills/brenda-database/SKILL.md on GitHub (opens in a new tab)

• browser-automation

  Browser automation for accessing scientific databases that lack REST APIs. Uses the browser-use Python framework (81k+ GitHub stars) to control a real browser via LLM vision. Enables data extraction from web-only databases like GEPIA2, GeneCards advanced features, COSMIC public data, and journal full-text access. Use as a fallback when curl-based API access fails or when the target database has n…

  skills/browser-automation/SKILL.md on GitHub (opens in a new tab)

• cellxgene-census

  Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your own data use scanpy or scvi-tools.

  skills/cellxgene-census/SKILL.md on GitHub (opens in a new tab)

• chembl-database

  Query ChEMBL bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactivity data (IC50, Ki), find inhibitors, perform SAR studies, for medicinal chemistry.

  skills/chembl-database/SKILL.md on GitHub (opens in a new tab)

• chembl-search

  Search ChEMBL bioactive molecules database with natural language queries. Find compounds and assay data with Valyu semantic search.

  skills/chembl-search/SKILL.md on GitHub (opens in a new tab)

• chemistry

  No description in the SKILL.md.

  skills/chemistry/SKILL.md on GitHub (opens in a new tab)

• cirq

  Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization experiments. Best for Google hardware, noise modeling, and low-level circuit design. For IBM hardware use qiskit; for quantum ML with autodiff use pennylane; for physics simulations use qutip.

  skills/cirq/SKILL.md on GitHub (opens in a new tab)

• citation-management

  Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.

  skills/citation-management/SKILL.md on GitHub (opens in a new tab)

• clinical-decision-support

  Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integra…

  skills/clinical-decision-support/SKILL.md on GitHub (opens in a new tab)

• clinical-reports

  Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation tools.

  skills/clinical-reports/SKILL.md on GitHub (opens in a new tab)

• clinical-trials-search

  Search ClinicalTrials.gov with natural language queries. Find clinical trials, enrollment, and outcomes using Valyu semantic search.

  skills/clinical-trials-search/SKILL.md on GitHub (opens in a new tab)

No skill matches that filter.

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