Bioclaw_Skills_Hub

In the author's own words, from each skill's SKILL.md — showing the first 30 of 66 files.

• ehr-analysis

  End-to-end EHR predictive modeling pipeline with PyHealth, covering dataset loading, task definition, model training, evaluation, calibration, and clinical interpretation.

  skills/ehr-analysis/SKILL.md on GitHub (opens in a new tab)

• alignment-and-mapping

  Workflow for read alignment, sorting, indexing, mapping statistics, and downstream-ready alignment artifacts.

  skills/core-bioinformatics/alignment-and-mapping/SKILL.md on GitHub (opens in a new tab)

• database-access

  Workflow for retrieving public omics datasets, sequences, annotations, and literature-linked biological resources.

  skills/core-bioinformatics/database-access/SKILL.md on GitHub (opens in a new tab)

• read-qc

  Workflow for sequencing read QC, trimming, contamination screening, and pre-alignment cleanup.

  skills/core-bioinformatics/read-qc/SKILL.md on GitHub (opens in a new tab)

• reporting-and-figure-export

  Workflow for packaging analysis outputs into reproducible reports, clean tables, and publication-ready figure exports.

  skills/core-bioinformatics/reporting-and-figure-export/SKILL.md on GitHub (opens in a new tab)

• sequence-and-format-io

  Workflow for foundational sequence parsing, conversion, compression handling, and interval-aware file validation.

  skills/core-bioinformatics/sequence-and-format-io/SKILL.md on GitHub (opens in a new tab)

• workflow-management

  Workflow for orchestrating reproducible omics pipelines with workflow engines and clear execution provenance.

  skills/core-bioinformatics/workflow-management/SKILL.md on GitHub (opens in a new tab)

• atac-seq

  ATAC-seq processing with assay QC, MACS3 peak calling, consensus peak matrices, differential accessibility, and motif or footprint follow-up.

  skills/epigenomics-and-regulation/atac-seq/SKILL.md on GitHub (opens in a new tab)

• chip-seq

  ChIP-seq peak calling and downstream interpretation with MACS3, signal track export, annotation, motif analysis, and differential binding review.

  skills/epigenomics-and-regulation/chip-seq/SKILL.md on GitHub (opens in a new tab)

• epitranscriptomics

  Workflow for RNA modification analysis such as m6A peak calling, differential modification, and transcript-level visualization.

  skills/epigenomics-and-regulation/epitranscriptomics/SKILL.md on GitHub (opens in a new tab)

• gene-regulatory-networks

  Workflow for regulatory network inference, regulon scoring, perturbation-aware comparison, and network visualization.

  skills/epigenomics-and-regulation/gene-regulatory-networks/SKILL.md on GitHub (opens in a new tab)

• hi-c-3d-genomics

  Workflow for Hi-C and related 3D genomics analyses including compartments, loops, TADs, differential contacts, and visualization.

  skills/epigenomics-and-regulation/hi-c-3d-genomics/SKILL.md on GitHub (opens in a new tab)

• methylation-analysis

  Workflow for methylation alignment or calling, DMR analysis, methylation QC, and locus-level interpretation.

  skills/epigenomics-and-regulation/methylation-analysis/SKILL.md on GitHub (opens in a new tab)

• comparative-genomics

  Workflow for orthology, synteny, ancestral reconstruction, and evolutionary comparison across genomes.

  skills/genomics-and-variation/comparative-genomics/SKILL.md on GitHub (opens in a new tab)

• copy-number

  Workflow for copy-number estimation, segmentation, annotation, and visualization in sequencing-based assays.

  skills/genomics-and-variation/copy-number/SKILL.md on GitHub (opens in a new tab)

• genome-assembly

  Workflow for de novo assembly, scaffolding, polishing, contamination review, and assembly QC.

  skills/genomics-and-variation/genome-assembly/SKILL.md on GitHub (opens in a new tab)

• long-read-genomics

  Workflow for nanopore or PacBio long-read QC, alignment, polishing, methylation-aware analysis, and structural variant discovery.

  skills/genomics-and-variation/long-read-genomics/SKILL.md on GitHub (opens in a new tab)

• phasing-imputation

  Workflow for haplotype phasing, genotype imputation, reference-panel matching, and imputation QC.

  skills/genomics-and-variation/phasing-imputation/SKILL.md on GitHub (opens in a new tab)

• variant-calling

  Workflow for small-variant and structural-variant discovery, filtering, annotation, and interpretation from sequencing data.

  skills/genomics-and-variation/variant-calling/SKILL.md on GitHub (opens in a new tab)

• metagenomics

  Shotgun metagenomics workflow with host-depletion-aware QC, taxonomic profiling, functional profiling, AMR follow-up, and reproducible community output tables.

  skills/metagenomics-and-microbiome/metagenomics/SKILL.md on GitHub (opens in a new tab)

• microbiome-amplicon

  Workflow for amplicon microbiome analysis including denoising, taxonomy assignment, diversity analysis, and differential abundance.

  skills/metagenomics-and-microbiome/microbiome-amplicon/SKILL.md on GitHub (opens in a new tab)

• pathogen-epi-genomics

  Workflow for outbreak-style pathogen genomics, surveillance, lineage assignment, and transmission-oriented comparative analysis.

  skills/metagenomics-and-microbiome/pathogen-epi-genomics/SKILL.md on GitHub (opens in a new tab)

• phylogenetics

  Workflow for multiple sequence alignment, tree inference, annotated tree visualization, and distance-based evolutionary comparison.

  skills/metagenomics-and-microbiome/phylogenetics/SKILL.md on GitHub (opens in a new tab)

• causal-genomics

  Workflow for fine-mapping, colocalization, mediation, pleiotropy analysis, and Mendelian randomization.

  skills/multi-omics-and-systems/causal-genomics/SKILL.md on GitHub (opens in a new tab)

• machine-learning-for-omics

  Workflow for predictive modeling, biomarker discovery, survival modeling, and explainability over omics-derived features.

  skills/multi-omics-and-systems/machine-learning-for-omics/SKILL.md on GitHub (opens in a new tab)

• multi-omics-integration

  Workflow for integrating matched or partially matched omics layers into shared latent structure and cross-modal interpretation.

  skills/multi-omics-and-systems/multi-omics-integration/SKILL.md on GitHub (opens in a new tab)

• pathway-analysis

  Workflow for enrichment testing, ranked-gene analysis, pathway scoring, and pathway-focused visualization across omics outputs.

  skills/multi-omics-and-systems/pathway-analysis/SKILL.md on GitHub (opens in a new tab)

• systems-biology

  Workflow for constraint-based metabolic modeling, context-specific models, gene essentiality, and systems-level interpretation.

  skills/multi-omics-and-systems/systems-biology/SKILL.md on GitHub (opens in a new tab)

• imaging-mass-cytometry

  Workflow for multiplexed imaging or IMC segmentation, phenotyping, and spatial summarization.

  skills/proteomics-and-metabolomics/imaging-mass-cytometry/SKILL.md on GitHub (opens in a new tab)

• metabolomics

  Workflow for untargeted or targeted metabolomics including preprocessing, normalization, annotation, statistics, and pathway mapping.

  skills/proteomics-and-metabolomics/metabolomics/SKILL.md on GitHub (opens in a new tab)

No skill matches that filter.

Similar skills

• awesome-agent-skillsby libukai Agent Skills 终极指南：快速入门、资源推荐、精选技能与实用工具 ｜The Ultimate Guide to Agent Skills: QuickStart, Resources, Features&Toolkit 5.2k stars
• anysearch-skillby anysearch-ai Unified real-time search engine skill for AI agents. Supports general web search, vertical domain search, parallel batch search, and full-p… 6.5k stars · 1 skill
• xiaohongshu-ops-skillby Xiangyu-CAS 把Openclaw 变成小红书运营助手，帮你分析、选题、创作、复盘、复刻，甚至全面托管 2.4k stars · 1 skill
• VideoClawby HITsz-TMG 🚀 AI 全自动化视频生成员工 | Your First AIGC Coworker. Chat an Idea. Get a Film. 🦞 1.9k stars · 1 skill
• ClawBioby ClawBio 🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free. 1.2k stars · 30 skills
• ClawKeeperby SafeAI-Lab-X ClawKeeper: Comprehensive Safety Protection for OpenClaw Agents Through Skills, Plugins, and Watchers (aka The Norton for OpenClaw) 1k stars · 30 skills