AcademicForge

In the author's own words, from each skill's SKILL.md — showing the first 30 of 33 files.

• scientific-visualization

  Create publication figures with matplotlib/seaborn/plotly. Multi-panel layouts, error bars, significance markers, colorblind-safe, export PDF/EPS/TIFF, for journal-ready scientific plots.

  skills/scientific-visualization/SKILL.md on GitHub (opens in a new tab)

• algorithmic-art

  Creating algorithmic art using p5.js with seeded randomness and interactive parameter exploration. Use this when users request creating art using code, generative art, algorithmic art, flow fields, or particle systems. Create original algorithmic art rather than copying existing artists' work to avoid copyright violations.

  skills/claude-science/algorithmic-art/SKILL.md on GitHub (opens in a new tab)

• alphafold2

  Predict protein structure for monomers and multimers with AlphaFold2 via the ColabFold runner (Mirdita et al. 2022, github.com/sokrypton/ColabFold; AlphaFold2 Jumper et al. 2021). Reach for this skill to fold a sequence or complex with the AF2/AF2-Multimer evoformer, to validate designed sequences by self-consistency pLDDT, ipTM, and RMSD, or to run a quick MSA-backed prediction using the public…

  skills/claude-science/alphafold2/SKILL.md on GitHub (opens in a new tab)

• boltz

  Structure prediction for protein, nucleic-acid, and small-molecule complexes with Boltz-2 (Passaro & Wohlwend et al. 2025, github.com/jwohlwend/boltz). Reach for this skill to validate designed binders against a target, to co-fold a protein with a SMILES or CCD ligand, or to get an open-source AlphaFold3 alternative with optional binding-affinity prediction.

  skills/claude-science/boltz/SKILL.md on GitHub (opens in a new tab)

• borzoi

  Predict genome-wide functional tracks (RNA-seq, CAGE, DNase, ChIP) from DNA sequence with Borzoi. Use this skill when: (1) Scoring the regulatory effect of a variant on expression/accessibility, (2) Generating predicted coverage tracks for a locus, (3) Prioritising non-coding variants by predicted track delta.

  skills/claude-science/borzoi/SKILL.md on GitHub (opens in a new tab)

• chai1

  Structure prediction for protein, nucleic-acid, and small-molecule complexes with the Chai-1 foundation model (Chai Discovery 2024, github.com/chaidiscovery/chai-lab). Reach for this skill to predict an antibody-antigen or protein-ligand complex from a single FASTA, to re-fold designed binders as an AlphaFold-multimer alternative, or to drive co-folding from Python for batched campaigns on a GPU.

  skills/claude-science/chai1/SKILL.md on GitHub (opens in a new tab)

• compute-env-setup

  Set up a compute environment on a remote provider so Claude Science jobs can run there. Covers direct SSH/conda hosts, Slurm clusters, container-via-bridge runners, and managed-API providers (Modal, GCP, RunPod). Use when standing up a new provider, porting an env to a different backend, adding a tool that needs its own software stack, or wiring weight caches. Triggers on "new compute provider",…

  skills/claude-science/compute-env-setup/SKILL.md on GitHub (opens in a new tab)

• customize

  Create, configure, and maintain custom agent profiles and author new skills via the `repl` tool. Use when the user wants to create an agent profile, build a custom agent, modify agent capabilities, attach or detach skills/connectors on a profile, author a skill, or inspect which connectors and tools are available. Also use whenever you need the `host.agents.*` or `host.skills.*` Python SDK.

  skills/claude-science/customize/SKILL.md on GitHub (opens in a new tab)

• diffdock

  Predict small-molecule binding poses with DiffDock-L (Corso et al. 2023/2024, github.com/gcorso/DiffDock) — blind diffusion docking that places a ligand into a protein pocket without a predefined search box and ranks the samples with a learned confidence model. Reach for this skill to dock a SMILES or SDF against a PDB, to generate ranked 3D poses for a small fragment library, or to get a startin…

  skills/claude-science/diffdock/SKILL.md on GitHub (opens in a new tab)

• esmfold2

  Biohub ESMFold2 / ESMFold2-Fast all-atom co-folding (Candido et al. 2026, github.com/Biohub/esm). Single-sequence and MSA modes; protein, DNA, RNA, ligand (CCD/SMILES), modified residues. FoldBench Ab-Ag 50-55%, PPI 70-77% DockQ-pass. Also covers the ESMC-{300M,600M,6B} protein language models from the same release: masked-LM logits, hidden states, mutation scoring, contact prediction, and the SA…

  skills/claude-science/esmfold2/SKILL.md on GitHub (opens in a new tab)

• evo2

  Score, embed, and generate DNA sequences with Evo 2, a long-context genomic foundation model. Use this skill when: (1) Computing per-nucleotide or per-sequence likelihoods for variant effect scoring, (2) Embedding genomic windows for downstream classification, (3) Generating DNA conditioned on a prefix, (4) Scoring regulatory or coding regions across species.

  skills/claude-science/evo2/SKILL.md on GitHub (opens in a new tab)

• fair-esm2

  Embed proteins with Meta AI's ESM-2 (`fair-esm` package). Use this skill when: (1) Extracting per-residue or per-sequence embeddings for downstream ML, (2) Masked-LM likelihood / mutation effect scoring, (3) Contact prediction from a sequence.

  skills/claude-science/fair-esm2/SKILL.md on GitHub (opens in a new tab)

• figure-composer

  Compose one publication-grade multi-panel figure. Entry from a one-line claim + data files, OR from an existing figure via `derive_outline_prompt` (you read the PNG). Runs a per-figure loop: outline (12-col grid, per-panel ask + label_budget) → render each panel with `panel_task` (loading `figure-style`), one at a time or parallelized → tile + stamp letters with `compose_figure` → adversarial com…

  skills/claude-science/figure-composer/SKILL.md on GitHub (opens in a new tab)

• figure-style

  Publication-grade figure correctness and legibility rules. Load before drawing any plot and call `apply_figure_style()` — sets a role-mapped font-size ladder, outward ticks, frameless legends, and 300-dpi output. The skill is a checklist, not a house look: data fidelity (claim-titles tested against every row, excluded data never enters summaries), label economy (floor and ceiling), colour threadi…

  skills/claude-science/figure-style/SKILL.md on GitHub (opens in a new tab)

• indication-dossier

  Generate a therapeutic indication dossier. Covers the patient population, epidemiology, disease biology, standard of care, regulatory precedent, and landmark clinical trials.

  skills/claude-science/indication-dossier/SKILL.md on GitHub (opens in a new tab)

• learn

  Use this skill when the user wants intellectual understanding — learning how or why something works, not getting a task done or soliciting Claude's judgment. Trigger for: - Explicit learning requests: teach, explain, ELI5, walk me through, quiz me, flashcards, "I'm rusty on"; definitions ("what is X") - Terse concept names implying "help me understand this": "Galois theory," "transformers, from s…

  skills/claude-science/learn/SKILL.md on GitHub (opens in a new tab)

• ligandmpnn

  Inverse-fold a backbone with ligand, nucleic-acid, and metal context using LigandMPNN (Dauparas et al. 2023, github.com/dauparas/LigandMPNN). Reach for this skill to redesign the residues lining a binding pocket around a bound small molecule or cofactor, to design metal-coordinating sites where the geometry must be respected, or to get threaded designed-sequence PDBs out of any MPNN run.

  skills/claude-science/ligandmpnn/SKILL.md on GitHub (opens in a new tab)

• literature-review

  Find, verify, and synthesize scientific literature — from "what's the seminal paper for X" through full multi-source reviews. Covers grounding claims in real retrieved sources, avoiding fabricated citations, handling retractions, and calibrating confidence to evidence strength.

  skills/claude-science/literature-review/SKILL.md on GitHub (opens in a new tab)

• managed-model-endpoints

  Register a model service in the managed family — a local model server container the daemon starts/stops on demand, or a remote upstream model API (https). Read the runbook, allocate a port (local only), compose idempotent start/stop scripts (local only), register once. Load when the user wants a model service available for inference, or when list_compute shows managed endpoints.

  skills/claude-science/managed-model-endpoints/SKILL.md on GitHub (opens in a new tab)

• openfold3

  Structure prediction using OpenFold3, an open-weights PyTorch reproduction of AlphaFold3 from the AlQuraishi Lab. Use this skill when predicting protein/nucleic-acid/ligand complex structures with an Apache-2.0-licensed AF3 reimplementation.

  skills/claude-science/openfold3/SKILL.md on GitHub (opens in a new tab)

• paper-narrative

  Judge and reshape the STORY a paper's figures tell. Input is the work itself — manuscript (or abstract) + figure deck — no hand-written brief. `paper_brief_prompt(abstract, captions)` hands you the prompt to write the brief yourself (pitch/vision/per-figure-claims); then you play a handling editor over the full deck and return hook_verdict (would Fig 1 make me send this for review?), arc (hook→me…

  skills/claude-science/paper-narrative/SKILL.md on GitHub (opens in a new tab)

• pdf-explore

  Use this skill when the user has attached a PDF, paper, report, or other document and the answer needs content from more than one place in it: summarize the methods or any other section, compare sections, find where a topic is discussed, read a value or label off a figure or chart, or find/list/extract every instance of something across the whole document (datasets, benchmarks, citations, figures…

  skills/claude-science/pdf-explore/SKILL.md on GitHub (opens in a new tab)

• product-self-knowledge

  Stop and consult this skill whenever your response would include specific facts about Anthropic's products. Covers: Claude Code (how to install, Node.js requirements, platform/OS support, MCP server integration, configuration), Claude API (function calling/tool use, batch processing, SDK usage, rate limits, pricing, models, streaming), and Claude.ai (Pro vs Team vs Enterprise plans, feature limit…

  skills/claude-science/product-self-knowledge/SKILL.md on GitHub (opens in a new tab)

• proteinmpnn

  Inverse-fold a protein backbone (PDB structure) into amino-acid sequence with ProteinMPNN (Dauparas et al. 2022, github.com/dauparas/ProteinMPNN). Reach for this skill to run sequence design on RFdiffusion backbones, to redesign one chain of a PDB while holding interface residues fixed, or to generate a temperature-swept set of sequences for downstream folding.

  skills/claude-science/proteinmpnn/SKILL.md on GitHub (opens in a new tab)

• remote-compute-modal

  Run GPU jobs on the user's own Modal account via host.compute.create('byoc:modal', ...). Covers the create→submit→wait_for_notification flow, the compute_provider kernel for env setup, image/volume resolution, and the two approval cards. Load once you've decided to dispatch to Modal.

  skills/claude-science/remote-compute-modal/SKILL.md on GitHub (opens in a new tab)

• remote-compute-ssh

  Submit→wait_for_notification→harvest workflow for the user's SSH/SLURM hosts. Load once you've decided to dispatch remote.

  skills/claude-science/remote-compute-ssh/SKILL.md on GitHub (opens in a new tab)

• scgpt

  Embed and annotate single-cell expression data with scGPT, a foundation model for single-cell biology. Use this skill when: (1) Producing cell embeddings from an AnnData for clustering/integration, (2) Zero-shot or fine-tuned cell-type annotation, (3) Gene-level representation for perturbation/GRN tasks. For probabilistic single-cell models (scVI etc.), use the scvi-tools library.

  skills/claude-science/scgpt/SKILL.md on GitHub (opens in a new tab)

• scvi-tools

  Probabilistic single-cell RNA-seq with scvi-tools — scVI for a batch-corrected latent space, scANVI for semi-supervised label transfer, and Bayesian differential expression. Reach for this skill to integrate scRNA-seq batches, embed cells for clustering, transfer annotations from a reference onto a query, or score differentially expressed genes per cluster. For spatial deconvolution / mapping use…

  skills/claude-science/scvi-tools/SKILL.md on GitHub (opens in a new tab)

• self-awareness

  Claude Science's own session database schema and SDK surface for introspection via host.query(). Load this when you need to query your own conversation history, token usage, cost accounting, execution log, or artifact metadata beyond what host.frames()/host.artifacts() provide — e.g. "how many tokens has this session used", "what was my last tool call", "list every file I've written", "where are…

  skills/claude-science/self-awareness/SKILL.md on GitHub (opens in a new tab)

• skill-creator

  Create new skills, modify and improve existing skills, and measure skill performance. Use when users want to create a skill from scratch, edit, or optimize an existing skill, run evals to test a skill, benchmark skill performance with variance analysis, or optimize a skill's description for better triggering accuracy.

  skills/claude-science/skill-creator/SKILL.md on GitHub (opens in a new tab)

No skill matches that filter.

Similar skills

• superpowersby obra An agentic skills framework & software development methodology that works. 300k stars · 15 skills
• uiby shadcn-ui Composable, accessible components with thoughtful defaults. Build your own component library with code you can customize, extend, and make… 126k stars · 2 skills
• cavemanby JuliusBrussee 🪨 why use many token when few token do trick. Viral skill + proxy for coding agents that cuts 65% of tokens by talking like a caveman. 113k stars · 20 skills
• agent-skillsby addyosmani Production-grade engineering skills for AI coding agents. 107k stars · 25 skills
• claude-memby thedotmack Persistent Context Across Sessions for Every Agent – Captures everything your agent does during sessions, compresses it with AI, and inject… 101k stars · 20 skills
• oh-my-openagentby code-yeongyu OmO: Just type "mass ulw" keyword with your prompt. Now you are the master of graph engineering. 70.1k stars · 25 skills