Updated 3d ago
by KangWang42
EpiAgentKit
Shared Claude Code and Codex workflows for epidemiology and biostatistics: rules, skills, hooks, and reproducible R/Python research tooling.
27 GitHub stars (27)
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- 29 skills (29 skills found in its SKILL.md files)
- 2 forks (2 forks)
- 3d ago last update (Last updated 3d ago)
Install
Skills CLI
npx skills add KangWang42/EpiAgentKit
Asks which skills and agents to install. Just one: npx skills add KangWang42/EpiAgentKit --skill academic-humanizer — add -g for every project.
Claude Code
git clone https://github.com/KangWang42/EpiAgentKitcp -r "EpiAgentKit/skills/academic-humanizer" ~/.claude/skills/
Copies the academic-humanizer skill into ~/.claude/skills/ for every project (use .claude/skills/ for one project). Repeat for the other skills listed below.
Plugin
/plugin marketplace add KangWang42/EpiAgentKit
Run inside Claude Code if the repository ships a plugin marketplace, then pick plugins from /plugin.
Skills can run code on your machine — read the SKILL.md first.
What it does
In the author's own words, from each skill's SKILL.md.
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academic-humanizer
编辑、压缩或终审已有中英文学术文本、研究报告、基金申请和投稿往来，保持事实、数字与引文。论文从零起草或章节级结构性重写使用 academic-publishing。
skills/academic-humanizer/SKILL.md on GitHub (opens in a new tab) -
academic-ppt
新建或结构性重做组会、文献分享、方法讲解、开题、中期和答辩 PPT。明确中山大学模板时使用 sysu-ppt；已有 PPTX 的局部文件修改只用 pptx。
skills/academic-ppt/SKILL.md on GitHub (opens in a new tab) -
academic-publishing
起草或结构性重写论文、学位论文部件和投稿材料，完成投稿或返修提交前核对。已有文字的局部润色使用 academic-humanizer；开题报告使用 graduate-opening-report。
skills/academic-publishing/SKILL.md on GitHub (opens in a new tab) -
biostat-principles
研究设计、生物统计分析、科研写作、咨询交付和项目审查的共同执行原则。口径争议、结果不一致或试新方法时使用；轻量任务保持原范围。
skills/biostat-principles/SKILL.md on GitHub (opens in a new tab) -
build-web-ui
创建、改版、修复或美化真实网页与 Web UI，完成响应式布局、交互和浏览器验收。适用于静态站、Quarto 和 Web 应用；不用于单独后端、原生应用或独立图片。
skills/build-web-ui/SKILL.md on GitHub (opens in a new tab) -
chatgpt-web-collaboration
在当前 Claude Code 或 Codex 会话中启用、使用或停止 ChatGPT 网页协作，辅助文献线索、文字审查和独立检查。只操作 chatgpt.com；不用于普通浏览或直接核验研究证据。
skills/chatgpt-web-collaboration/SKILL.md on GitHub (opens in a new tab) -
consulting-delivery
把已完成并验证的 R/Python 分析整理为可阅读、可复现且可追溯的客户交付包。用于正式结果打包或外发准备；不用于未完成分析、内部预览或单张表。
skills/consulting-delivery/SKILL.md on GitHub (opens in a new tab) -
docx
Read, create, edit, render or validate Word .docx files, including comments and tracked changes. Use for actual Word input or output, not prose-only requests.
skills/docx/SKILL.md on GitHub (opens in a new tab) -
epi-project-audit
审查流行病学项目的数据、代码、结果、表图、正文与交付一致性，判定正式发布条件。用于项目复核或全面质控；单个文件或局部格式检查使用对应技能。
skills/epi-project-audit/SKILL.md on GitHub (opens in a new tab) -
epi-study-design
制定或审查流行病学研究设计、estimand、终点、纳排、偏倚控制、样本量/精度、PROTOCOL 和 SAP。不用于目录初始化、模型实跑或论文结果写作。
skills/epi-study-design/SKILL.md on GitHub (opens in a new tab) -
epiagentkit-maintenance
维护 EpiAgentKit 的规则、skills、hooks、安装同步和维护文档；新增、修改、修复、重命名或删除 skill 时使用。普通研究项目的数据分析、写作或项目初始化不触发本 skill。
skills/epiagentkit-maintenance/SKILL.md on GitHub (opens in a new tab) -
evidence-research
核验科研事实、引文、DOI/PMID，检索最新证据、指南与方法依据，评价指标、量表或方法的适用性。不替代项目数据核验、统计分析或论文写作。
skills/evidence-research/SKILL.md on GitHub (opens in a new tab) -
git-commit-helper
Review diffs and create Conventional Commit messages or commits; push only on explicit request. Use in an existing Git repository, without installing Git or initializing one.
skills/git-commit-helper/SKILL.md on GitHub (opens in a new tab) -
graduate-opening-report
依据已确认研究方案和学院模板起草、结构性重写或终审硕士/博士开题报告及正式表单。不用于完整学位论文、单段润色或单纯 Word 版式修改。
skills/graduate-opening-report/SKILL.md on GitHub (opens in a new tab) -
manuscript-peer-review
按期刊同行评审要求审查生物医学与公共卫生稿件，生成可定位的 major/minor comments 或 reviewer report。用于明确审稿请求；不用于作者侧改稿、审稿回复或项目审计。
skills/manuscript-peer-review/SKILL.md on GitHub (opens in a new tab) -
pdf
读取、提取、创建或处理实际 PDF 的页面、OCR、表单、水印、加密与显示。PDF 是输入或指定输出时使用；专业内容由对应内容技能负责。
skills/pdf/SKILL.md on GitHub (opens in a new tab) -
pptx
Read, create, edit, render or validate .pptx files, including templates, layouts, notes and comments. Use for actual presentation files, not talk planning alone.
skills/pptx/SKILL.md on GitHub (opens in a new tab) -
project-init
按明确请求初始化分析、论文、咨询、教学或单次任务的最小项目结构。已有项目分析、简单作业和快速核验不触发；不自动启用 Git。
skills/project-init/SKILL.md on GitHub (opens in a new tab) -
publication-figures
从真实数据或已验证结果绘制、修改或审查 R/Python 统计图及模型诊断图，包括森林图、生存曲线、ROC 和热图。流程、机制和框架图使用 research-visuals。
skills/publication-figures/SKILL.md on GitHub (opens in a new tab) -
python-biostats
用 Python 完成生物统计清洗、描述、回归、生存、预测验证、统计表和代码修复。仅在用户明确选 Python 或项目已有 Python 主流程时使用；不因 R 依赖缺失触发。
skills/python-biostats/SKILL.md on GitHub (opens in a new tab) -
python-ecg-analysis
通用 Python 心电图（ECG）分析技能，覆盖 ECG 预处理与波形质量控制、心拍/心率变异性（HRV）/表征特征、纵向或多轮 ECG 对齐、超声或临床结局连接及患者级建模。 触发场景：(1) 用 Python 处理 ECG 原始信号；(2) 做心拍、HRV、波形或表征特征；(3) 对齐同一患者多轮 ECG；(4) 连接 ECG 与超声/临床结局；(5) 构建患者级 ECG 模型。 不适用：普通 R 生物统计任务、非 ECG 的通用机器学习、仅写论文或报告。项目命令、参数和数据位置必须从项目规则、README、代码与实际 --help 读取，不得写死。 配合规则：开工前对齐 biostat-principles；实际生成统计图时使用 publication-figures。
skills/python-ecg-analysis/SKILL.md on GitHub (opens in a new tab) -
r-biostats
用 R 完成生物统计清洗、描述、回归、生存、中介、Meta 分析、统计表和代码修复。未指定且无既定语言时默认使用；明确 Python 流程、研究设计或论文写作不触发。
skills/r-biostats/SKILL.md on GitHub (opens in a new tab) -
report-writing
撰写、续写或重构中文分析报告、进展报告、操作指南、备忘或纪要，按请求交付正文或完整文件。只要解释或聊天摘要时不创建文件；论文、投稿材料和咨询交付包打包分别使用对应技能。
skills/report-writing/SKILL.md on GitHub (opens in a new tab) -
research-visuals
生成或重绘科研流程、框架、机制、模型架构、技术路线、图形摘要和内容插图，默认使用 imagegen。统计图、原始科研图像和真实截图分别按其证据类型处理；明确矢量要求或工具不可用时使用 svg-diagrams。
skills/research-visuals/SKILL.md on GitHub (opens in a new tab) -
skill-creator
Create, revise, optimize or package an agent skill and its supporting resources. Use for skill authoring, not ordinary work performed with an existing skill.
skills/skill-creator/SKILL.md on GitHub (opens in a new tab) -
svg-diagrams
创建或修改精确、可编辑的 SVG 非统计图解。仅用于明确 SVG/矢量需求、现有 SVG 编辑、强制矢量格式或已核实 imagegen 不可用；不因生成图质量不合格而触发。
skills/svg-diagrams/SKILL.md on GitHub (opens in a new tab) -
sysu-ppt
使用中山大学官方模板制作组会、开题、中期和答辩 PPT。仅在用户明确中山大学场景或选定中大模板时使用；不用于未说明学校的通用汇报。
skills/sysu-ppt/SKILL.md on GitHub (opens in a new tab) -
workflow-retrospective
根据当前会话的用户纠正和可定位证据，在 workflow.txt 解释工作流为何未阻止问题并提出待核验调整。用于明确复盘或交接请求；不直接修改 EpiAgentKit 或正式研究产物。
skills/workflow-retrospective/SKILL.md on GitHub (opens in a new tab) -
xlsx
读取、清洗、创建、修改、格式化或转换 XLSX、XLSM、CSV、TSV 文件，核对公式与显示。用于实际表格输入或输出；不替代统计分析，也不控制实时 Excel 或 Google Sheets。
skills/xlsx/SKILL.md on GitHub (opens in a new tab)
No skill matches that filter.
Review before you install
A skill is a set of instructions and scripts your agent will follow, and it can run code on your machine. Read the SKILL.md and any scripts first — this listing is not a security review.
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