Updated 3mo ago
by QinghongLin
paperdoctor
PaperDoctor: Evidence-Grounded and Actionable Feedback for Scientific Papers in Progress
43 GitHub stars (43)
+5 in 16 days
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- 11 skills (11 skills found in its SKILL.md files)
- 1 forks (1 forks)
- 3mo ago last update (Last updated 3mo ago)
Install
Skills CLI
npx skills add QinghongLin/paperdoctor
Asks which skills and agents to install. Just one: npx skills add QinghongLin/paperdoctor --skill prepare-paper — add -g for every project.
Claude Code
git clone https://github.com/QinghongLin/paperdoctorcp -r "paperdoctor/skills/prepare-paper" ~/.claude/skills/
Copies the prepare-paper skill into ~/.claude/skills/ for every project (use .claude/skills/ for one project). Repeat for the other skills listed below.
Plugin
/plugin marketplace add QinghongLin/paperdoctor
Run inside Claude Code if the repository ships a plugin marketplace, then pick plugins from /plugin.
Skills can run code on your machine — read the SKILL.md first.
What it does
In the author's own words, from each skill's SKILL.md.
-
prepare-paper
Organize a paper PDF and its codebase into clean reading artifacts. Use this before any other read-* skills.
skills/prepare-paper/SKILL.md on GitHub (opens in a new tab) -
read-bib
Verify each cited reference exists via web search.
skills/read-bib/SKILL.md on GitHub (opens in a new tab) -
read-claim
Deep extraction of all verifiable claims from a research paper. Actively proposes implicit claims, splits compound statements, and flags cross-reference inconsistencies.
skills/read-claim/SKILL.md on GitHub (opens in a new tab) -
read-code
Verify paper claims with evidence_type "code" against the actual codebase. Use after read-txt to check if code matches what the paper says.
skills/read-code/SKILL.md on GitHub (opens in a new tab) -
read-exp
Review experiment design and produce a prioritized reproduction plan. Targets claims with evidence_type "experiment" from check_claim.json. Output feeds into run-exp.
skills/read-exp/SKILL.md on GitHub (opens in a new tab) -
read-prior
Web-search validation of citation and novelty claims from check_claim.json. Checks whether cited facts are accurate and novelty claims ("first", "pioneering") hold against published literature.
skills/read-prior/SKILL.md on GitHub (opens in a new tab) -
read-theory
Verify theoretical claims — mathematical derivations, proofs, and formal arguments. Targets claims with evidence_type "theoretical" from check_claim.json.
skills/read-theory/SKILL.md on GitHub (opens in a new tab) -
read-txt
Check writing quality — grammar, typos, unclear phrasing, inconsistent terminology, logical flow issues. Scans the full paper text and reports issues by page.
skills/read-txt/SKILL.md on GitHub (opens in a new tab) -
read-vis
Check a paper's visual presentation for layout, figure quality, spacing, and formatting issues. Use when reviewing paper polish before submission.
skills/read-vis/SKILL.md on GitHub (opens in a new tab) -
run-exp
Run experiments based on the plan from read-exp. Reads check_exp.json and check_code.json, creates environment, runs experiments, compares against paper numbers.
skills/run-exp/SKILL.md on GitHub (opens in a new tab) -
vis-preview
Generate an interactive HTML review with PDF page images (left) + code viewer with syntax highlighting (middle) + findings with bidirectional navigation (right). All findings are permanently highlighted on the PDF and clickable in both directions.
skills/vis-preview/SKILL.md on GitHub (opens in a new tab)
No skill matches that filter.
Review before you install
A skill is a set of instructions and scripts your agent will follow, and it can run code on your machine. Read the SKILL.md and any scripts first — this listing is not a security review.