medical-research-skills

In the author's own words, from each skill's SKILL.md — showing the first 30 of 605 files.

• skill-auditor

  A comprehensive auditor for any agent skill — including Manus, OpenClaw/ClawHub, Claude, LobeHub, or custom SKILL.md-based skills. Use this skill whenever a user wants to evaluate, audit, review, score, or quality-check an agent skill before publishing, updating, or deploying. Covers two hard veto gates (structural redlines + research integrity redlines), static quality scoring across 25 criteria…

  skill-auditor/SKILL.md on GitHub (opens in a new tab)

• arxiv-preflight

  Run a submission-readiness preflight on a manuscript before arXiv upload. Use when the user is preparing an arXiv submission, asks to check a paper before uploading, mentions hallucinated or fake references, leftover LLM meta-comments / prompts in text, placeholder data (TODO, TBD, XX%), AI-use disclosure, scholarly integrity, research integrity, or arXiv moderation risk — even if they don't say…

  awesome-med-research-skills/Academic Writing/arxiv-preflight/SKILL.md on GitHub (opens in a new tab)

• author-response-builder

  Turns reviewer comments into structured, professional point-by-point responses linked to manuscript revisions, clarifications, rebuttals, and additional analyses.

  awesome-med-research-skills/Academic Writing/author-response-builder/SKILL.md on GitHub (opens in a new tab)

• claim-strength-calibrator

  Calibrates manuscript claim strength so wording matches the actual evidence level, study design, and validation status.

  awesome-med-research-skills/Academic Writing/claim-strength-calibrator/SKILL.md on GitHub (opens in a new tab)

• conference-abstract-writer

  Condenses a full study into conference-submission abstract format. Use when adapting a manuscript abstract or study summary to meet a specific conference's word limit, structured format (Background/Methods/Results/Conclusion), character limits, or required section headings. Also triggers on "adapt my abstract for [conference]", "shorten my abstract to 250 words", "reformat for ASCO/ASGCT/SfN/AACR…

  awesome-med-research-skills/Academic Writing/conference-abstract-writer/SKILL.md on GitHub (opens in a new tab)

• consistency-checker-across-manuscript

  Checks consistency across title, abstract, methods, results, figures, tables, and supplements to identify internal contradictions and version drift in biomedical manuscripts.

  awesome-med-research-skills/Academic Writing/consistency-checker-across-manuscript/SKILL.md on GitHub (opens in a new tab)

• cover-letter-drafter

  Drafts journal-ready cover letters for manuscript submission. Use when preparing a submission package, communicating the manuscript's contributions and journal fit to editors, or tailoring the novelty framing for a specific journal's scope. Also triggers on "write a cover letter for my paper", "draft a submission cover letter", "help me write to the editor", or "cover letter for [journal name]".

  awesome-med-research-skills/Academic Writing/cover-letter-drafter/SKILL.md on GitHub (opens in a new tab)

• discussion-composer

  Composes a Discussion around key findings, mechanisms, clinical relevance, and limitations. Use when writing or improving a Discussion section for any biomedical manuscript — including interpreting results, connecting to prior literature, addressing unexpected findings, framing limitations, and writing the conclusion. Also triggers on "write my discussion", "help me discuss my findings", "how do…

  awesome-med-research-skills/Academic Writing/discussion-composer/SKILL.md on GitHub (opens in a new tab)

• figure-legend-writer

  Writes complete, publication-grade figure legends that can stand on their own. Use when writing or revising figure legends for any scientific figure — bar charts, line graphs, scatter plots, box plots, heatmaps, survival curves, flow cytometry plots, western blots, microscopy images, or schematic diagrams. Also triggers on "write a figure legend for", "help me describe this figure", "my figure ne…

  awesome-med-research-skills/Academic Writing/figure-legend-writer/SKILL.md on GitHub (opens in a new tab)

• grant-specific-aims-writer

  Writes Specific Aims pages for grant applications. Use when drafting or revising the Specific Aims page (NIH R01/R21/R03), NSF Project Summary, or equivalent for any major funding agency. Also triggers on "write my specific aims", "help me draft specific aims for NIH", "what should a specific aims page include", "NSF project summary", "write my grant aims", or "how do I structure an R01".

  awesome-med-research-skills/Academic Writing/grant-specific-aims-writer/SKILL.md on GitHub (opens in a new tab)

• graphical-abstract-generator

  Converts a biomedical study storyline into a graphical abstract and, when direct image capability is available, generates the graphical abstract directly; otherwise it falls back to prompts, Mermaid flowcharts, or designer-facing briefs.

  awesome-med-research-skills/Academic Writing/graphical-abstract-generator/SKILL.md on GitHub (opens in a new tab)

• introduction-logic-builder

  Builds background-gap-objective logic for biomedical manuscript introductions with clear study positioning and disciplined narrative structure.

  awesome-med-research-skills/Academic Writing/introduction-logic-builder/SKILL.md on GitHub (opens in a new tab)

• introduction-section-writer

  Writes the full Introduction section of a biomedical manuscript based on an approved or sufficiently clear study logic, while preserving evidence boundaries and introduction discipline.

  awesome-med-research-skills/Academic Writing/introduction-section-writer/SKILL.md on GitHub (opens in a new tab)

• latex-manuscript-format-converter

  Converts existing manuscript content into LaTeX format aligned with a target journal, conference, or template while preserving manuscript meaning and structural integrity.

  awesome-med-research-skills/Academic Writing/latex-manuscript-format-converter/SKILL.md on GitHub (opens in a new tab)

• lay-summary-for-cross-disciplinary-teams

  Rewrites technical research content into a structured lay summary that cross-disciplinary teams can quickly understand and act on. Use when the user wants to explain research to colleagues outside their specialty — clinicians, wet-lab scientists, bioinformaticians, product managers, or leadership. Trigger on: "lay summary", "explain my research to the team", "non-technical summary", "cross-discip…

  awesome-med-research-skills/Academic Writing/lay-summary-for-cross-disciplinary-teams/SKILL.md on GitHub (opens in a new tab)

• limitation-and-risk-writer

  Acknowledges limitations in sample, design, measurement, and validation in a professional way that improves credibility without undermining the whole paper. Use when writing the limitations paragraph of a Discussion section, preparing a grant risk assessment, responding to reviewers about study weaknesses, or framing scope boundaries for a paper. Also triggers on "write my limitations", "how shou…

  awesome-med-research-skills/Academic Writing/limitation-and-risk-writer/SKILL.md on GitHub (opens in a new tab)

• medical-english-precision-editor

  Improves medical English precision without changing the underlying facts, evidence boundaries, or intended scientific meaning.

  awesome-med-research-skills/Academic Writing/medical-english-precision-editor/SKILL.md on GitHub (opens in a new tab)

• methods-section-writer

  Turns your protocol and analysis workflow into publication-ready Methods text. Use when writing or revising the Methods section of a biomedical manuscript, ensuring it complies with reporting guidelines (CONSORT, STROBE, PRISMA, TRIPOD), matches what is in the Results section, and satisfies journal-specific word limits and declarations. Also triggers on "write my methods", "revise my methods sect…

  awesome-med-research-skills/Academic Writing/methods-section-writer/SKILL.md on GitHub (opens in a new tab)

• paper-sprint-review

  Scrum-inspired paper review, revision, and R&R workflow. Handles docx/tex/md/PDF in English or Chinese. Auto-detects manuscript stage, estimates sprint count, runs multi-lens review (Contribution/Rigor/Writing/Editor), generates prioritized revision backlog, exports MD/DOCX/PDF/HTML reports. Use when asked to review a paper, revise based on reviewer comments, handle R&R, respond to peer review, p…

  awesome-med-research-skills/Academic Writing/paper-sprint-review/SKILL.md on GitHub (opens in a new tab)

• poster-storyline-builder

  Reorganizes a paper into a storyline suitable for scientific posters. Use when planning the section structure, title hierarchy, figure selection, and live-explanation flow for an academic conference poster. Also triggers on "help me design a poster layout", "what sections should my poster have", "how do I arrange my poster", "poster structure for [conference]", or "which figures should I use for…

  awesome-med-research-skills/Academic Writing/poster-storyline-builder/SKILL.md on GitHub (opens in a new tab)

• reference-integrity-checker

  Checks whether manuscript references are accurately matched to claims, appropriately scoped, and not overextended, misquoted, or second-hand cited.

  awesome-med-research-skills/Academic Writing/reference-integrity-checker/SKILL.md on GitHub (opens in a new tab)

• reporting-guideline-compliance-checker

  Checks biomedical manuscripts against reporting guidelines such as CONSORT, STROBE, PRISMA, and TRIPOD to identify missing or weak reporting elements before submission or revision.

  awesome-med-research-skills/Academic Writing/reporting-guideline-compliance-checker/SKILL.md on GitHub (opens in a new tab)

• results-section-structurer

  Organizes biomedical figures, analyses, and result blocks into a clear Results section structure with disciplined narrative ordering and evidence-aware presentation.

  awesome-med-research-skills/Academic Writing/results-section-structurer/SKILL.md on GitHub (opens in a new tab)

• results-section-writer

  Writes the full Results section of a biomedical manuscript from a sufficiently clear result structure, figure inventory, or analysis summary while preserving evidence boundaries and result hierarchy.

  awesome-med-research-skills/Academic Writing/results-section-writer/SKILL.md on GitHub (opens in a new tab)

• revision-strategy-planner

  Builds prioritized manuscript revision plans for major or minor revisions by separating comments that require experiments, analyses, clarification, restructuring, or wording changes.

  awesome-med-research-skills/Academic Writing/revision-strategy-planner/SKILL.md on GitHub (opens in a new tab)

• slide-deck-for-lab-meeting

  Structures research progress into focused and actionable slides for lab meetings or project reviews without inventing missing content.

  awesome-med-research-skills/Academic Writing/slide-deck-for-lab-meeting/SKILL.md on GitHub (opens in a new tab)

• table-narrative-writer

  Converts biomedical table content into clear manuscript or presentation narrative by prioritizing meaningful patterns, contrasts, and interpretation boundaries rather than restating every number.

  awesome-med-research-skills/Academic Writing/table-narrative-writer/SKILL.md on GitHub (opens in a new tab)

• target-journal-matcher

  Matches your study to appropriate journals based on topic, design, and evidence strength. Use when deciding where to submit a manuscript, comparing journal options by impact factor vs scope fit vs method tolerance, or finding a realistic submission target after a rejection. Also triggers on "where should I submit this paper", "which journal is best for my study", "find journals for my manuscript"…

  awesome-med-research-skills/Academic Writing/target-journal-matcher/SKILL.md on GitHub (opens in a new tab)

• title-and-abstract-optimizer

  Optimizes manuscript titles and abstracts for information density, factual accuracy, and submission fit in biomedical research writing.

  awesome-med-research-skills/Academic Writing/title-and-abstract-optimizer/SKILL.md on GitHub (opens in a new tab)

• batch-effect-correction

  Use when correcting batch effects in merged bulk expression matrices with sample-level batch metadata while preserving biological group structure and generating before-and-after QC plots. NOT for: single-cell integration, raw FASTQ processing, differential expression without batch labels, or datasets without biological groups.

  awesome-med-research-skills/Data Analysis/batch-effect-correction/SKILL.md on GitHub (opens in a new tab)

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