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Updated 7mo ago

by xjtulyc

MedgeClaw

Open-source AI research assistant for biomedicine — chat to run RNA-seq, drug discovery, clinical analysis, and more. Built on Claude Code with 140 K-Dense scientific skills, real-time dashboard, and RStudio/JupyterLab integration. | 开源生物医学 AI 研究助手，对话即可驱动转录组、药物发现、临床分析等工作流，集成 140 个科学技能与实时研究看板。

Works with
  • Claude
View on GitHub (opens in a new tab)

618 GitHub stars (618)

Stars gained per day · daily snapshots since Sep 30
Stars gained per day, Sep 30 to Oct 16: −23 in total; the busiest day was Oct 3 with +1 stars.Oct 1: 0 starsOct 2: −26 starsOct 3: +1 starsOct 4: 0 starsOct 5: +1 starsOct 6: 0 starsOct 7: 0 starsOct 8: 0 starsOct 9: 0 starsOct 10: 0 starsOct 11: 0 starsOct 12: 0 starsOct 13: +1 starsOct 14: 0 starsOct 15: 0 starsOct 16: 0 stars
Stars gained between daily snapshots
PeriodNew stars
Oct 10
Oct 2−26
Oct 3+1
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  • 7 skills (7 skills found in its SKILL.md files)
  • 134 forks (134 forks)
  • 7mo ago last update (Last updated 7mo ago)

Install

Skills CLI

npx skills add xjtulyc/MedgeClaw

Asks which skills and agents to install. Just one: npx skills add xjtulyc/MedgeClaw --skill biomed-dispatch — add -g for every project.

Claude Code

git clone https://github.com/xjtulyc/MedgeClawcp -r "MedgeClaw/skills/biomed-dispatch" ~/.claude/skills/

Copies the biomed-dispatch skill into ~/.claude/skills/ for every project (use .claude/skills/ for one project). Repeat for the other skills listed below.

Plugin

/plugin marketplace add xjtulyc/MedgeClaw

Run inside Claude Code if the repository ships a plugin marketplace, then pick plugins from /plugin.

Skills can run code on your machine — read the SKILL.md first.

What it does

In the author's own words, from each skill's SKILL.md.

  • biomed-dispatch

    Dispatch biomedical research and data analysis tasks to Claude Code with K-Dense Scientific Skills. Use this skill when the user asks to run any bioinformatics, genomics, drug discovery, clinical data analysis, proteomics, multi-omics, medical imaging, or scientific computation task. Also use for literature search (PubMed, bioRxiv), pathway analysis, protein structure prediction, or scientific wr…

    skills/biomed-dispatch/SKILL.md on GitHub (opens in a new tab)

  • charls-reproduce

    CHARLS (China Health and Retirement Longitudinal Study) database-specific knowledge for reproducing published papers. Use when reproducing or analyzing papers that use CHARLS data, including variable mapping from harmonized to raw questionnaire items, cognitive function scoring (episodic memory, mental status, TICS), CESD-10 depression screening, social isolation index construction, and chronic d…

    skills/charls-reproduce/SKILL.md on GitHub (opens in a new tab)

  • cjk-viz

    CJK (中日韩) 字体检测与 matplotlib 配置。任何涉及中文标签、标题、图例的 可视化任务启动前必须先执行本 skill 的字体检测流程，确保不会出现方块乱码。 适用于 matplotlib / seaborn / plotly 静态导出等场景。

    skills/cjk-viz/SKILL.md on GitHub (opens in a new tab)

  • dashboard

    No description in the SKILL.md.

    skills/dashboard/SKILL.md on GitHub (opens in a new tab)

  • feishu-rich-card

    Send rich interactive cards with embedded images in Feishu group chats. Use when reporting progress, sharing analysis results, or presenting any content that benefits from mixed text+image layout in Feishu. Combines SVG UI templates (or matplotlib/PIL charts) with Feishu Card Kit API.

    skills/feishu-rich-card/SKILL.md on GitHub (opens in a new tab)

  • paper-reproduce

    Systematic methodology for reproducing published academic papers using provided data. Use when the user asks to reproduce, replicate, or verify results from a published paper, including sample selection, descriptive statistics, regression analyses, and generating reproduction reports (Markdown + LaTeX PDF). Covers the full pipeline: data exploration, variable identification/mapping, sample filter…

    skills/paper-reproduce/SKILL.md on GitHub (opens in a new tab)

  • svg-ui-templates

    Generate professional SVG UI panels for structured information display. Use when presenting lists, task checklists, pipeline/dependency status diagrams, or rich-text report layouts as SVG images. Covers four templates - list-panel, checklist-panel, pipeline-status, richtext-layout. Style is professional, business-oriented, academic-grade with Material Design color palette.

    skills/svg-ui-templates/SKILL.md on GitHub (opens in a new tab)

Review before you install

A skill is a set of instructions and scripts your agent will follow, and it can run code on your machine. Read the SKILL.md and any scripts first — this listing is not a security review.