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Updated 3d ago

by Boom5426

Nature-Paper-Skills

An AI-powered Scientific Writing Workflow: Agent skills for drafting, revising, auditing, and resubmitting Nature-style journal manuscripts.

  • Active — Updated in the last 14 days
View on GitHub (opens in a new tab)

657 GitHub stars (657)

+106 in 30 days

Stars gained per day · daily snapshots since Sep 30
Stars gained per day, Sep 30 to Nov 6: +140 in total; the busiest day was Oct 3 with +11 stars.Oct 1: 0 starsOct 2: +4 starsOct 3: +11 starsOct 4: +4 starsOct 5: +8 starsOct 6: +4 starsOct 7: +3 starsOct 8: +4 starsOct 9: +4 starsOct 10: +3 starsOct 11: +3 starsOct 12: +5 starsOct 13: +4 starsOct 14: +6 starsOct 15: +4 starsOct 16: +2 starsOct 17: +6 starsOct 18: 0 starsOct 19: +4 starsOct 20: +1 starsOct 21: +10 starsOct 22: +2 starsOct 23: +6 starsOct 24: +7 starsOct 25: +5 starsOct 26: +2 starsOct 27: +3 starsOct 28: +4 starsOct 29: +1 starsOct 30: +4 starsOct 31: +2 starsNov 1: +2 starsNov 2: +1 starsNov 3: +6 starsNov 4: +2 starsNov 5: +2 starsNov 6: +1 stars
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  • 28 skills (28 skills found in its SKILL.md files)
  • 54 forks (54 forks)
  • 3d ago last update (Last updated 3d ago)

Install

Skills CLI

npx skills add Boom5426/Nature-Paper-Skills

Asks which skills and agents to install. Just one: npx skills add Boom5426/Nature-Paper-Skills --skill nature-paper-workflow — add -g for every project.

Claude Code

git clone https://github.com/Boom5426/Nature-Paper-Skillscp -r "Nature-Paper-Skills/packaging/chatgpt-work/skill" ~/.claude/skills/

Copies the nature-paper-workflow skill into ~/.claude/skills/ for every project (use .claude/skills/ for one project). Repeat for the other skills listed below.

Plugin

/plugin marketplace add Boom5426/Nature-Paper-Skills

Run inside Claude Code if the repository ships a plugin marketplace, then pick plugins from /plugin.

Skills can run code on your machine — read the SKILL.md first.

What it does

In the author's own words, from each skill's SKILL.md.

  • nature-paper-workflow

    Revise scientific manuscripts or a single section such as the Abstract, Introduction or Discussion, make a technical draft readable for scientists outside the field, improve Results and Review article structure, audit submission evidence, or prepare responses to reviewers. Use for 优化论文、润色论文、改摘要、写引言、面向大同行、去 AI 味、投稿前检查 and 审稿回复. Apply the bundled Nature Paper Skills workflows to the draft and evide…

    packaging/chatgpt-work/skill/SKILL.md on GitHub (opens in a new tab)

  • anti-defensive-writing

    Remove audit, defensive, self-critical, developer-facing and commitment writing from manuscripts, Supplementary Information, legends, table notes, data/code statements and figure content. Preserve numbers, definitions, reproducibility facts, mandated statistics, null results and conditions that determine reported values. What is load-bearing depends on the target venue: an ML conference needs the…

    skills/core/anti-defensive-writing/SKILL.md on GitHub (opens in a new tab)

  • citation-verifier

    Use when checking manuscript citations, bibliography hygiene, DOI or PMID completeness, placeholder references, or BibTeX consistency before submission or revision.

    skills/core/citation-verifier/SKILL.md on GitHub (opens in a new tab)

  • claim-source-verification

    Use when a manuscript's claims need to be checked against the sources cited for them, when literature search results must be verified before they enter a draft, or when an agent or collaborator has proposed references that have not yet been adversarially reviewed. This is claim-to-evidence verification, not bibliography hygiene; for duplicate keys, DOI syntax, and metadata cleanup use citation-ve…

    skills/core/claim-source-verification/SKILL.md on GitHub (opens in a new tab)

  • data-availability

    Use when drafting, auditing, or revising Data Availability statements, repository plans, accession-number placement, source-data coverage, or restricted-data wording for journal submission or resubmission.

    skills/core/data-availability/SKILL.md on GitHub (opens in a new tab)

  • draft-marker-discipline

    Use when a manuscript is being drafted across many sessions and needs auditable open-question tracking: in-source draft markers with distinct jobs, triage of open items by what would actually resolve each one, word counts that exclude draft apparatus, safe archival of superseded material, and assertion-guarded scripted edits. Load before doing a batch pass over TODO markers or before quoting a ma…

    skills/core/draft-marker-discipline/SKILL.md on GitHub (opens in a new tab)

  • figure-planner

    Use when designing, restructuring, or auditing manuscript figures and you need to define one main claim per figure, assign panel roles, align legends with the text, or decide what belongs in main figures versus supplement.

    skills/core/figure-planner/SKILL.md on GitHub (opens in a new tab)

  • manuscript-optimizer

    Use when auditing, restructuring, or revising a research manuscript whose scientific question, claim hierarchy, evidence chain, section logic, figures, terminology, or prose may be unclear or out of sync. Apply before sentence-level polishing, especially for whole drafts, major revisions, resubmissions, overclaiming, experiment-by-experiment Results, inaccessible narratives, or manuscripts that n…

    skills/core/manuscript-optimizer/SKILL.md on GitHub (opens in a new tab)

  • paper-bootstrap

    Use when starting a new manuscript project or cleaning up an existing paper directory and you need a standard structure, active source files, project memory, and venue defaults before deeper writing begins.

    skills/core/paper-bootstrap/SKILL.md on GitHub (opens in a new tab)

  • paper-workflow

    Route general manuscript requests such as improve my paper, revise this draft, 优化论文, 润色论文 or 投稿前检查. Identify the article type, requested scope, the sections in scope and available evidence, then choose the necessary writing or checking steps. Also use when one section is named, such as rewrite the Abstract, 改摘要, 写引言 or 讨论怎么写, or when a draft must reach a broad reader (面向大同行, 写给非本领域读者, too technic…

    skills/core/paper-workflow/SKILL.md on GitHub (opens in a new tab)

  • rebuttal-response

    Analyze, draft, revise, or audit scientific peer-review response letters and point-by-point rebuttals. Use for reviewer comments, response letters, rebuttals, revision summaries, quoted manuscript changes, replies that must align with a manuscript or Supplementary Information, and submission-ready checks of direct question-answer alignment, evidence, figures, tables, notes, panels, terminology, n…

    skills/core/rebuttal-response/SKILL.md on GitHub (opens in a new tab)

  • results-section-revision

    Use when revising a scientific manuscript Results section whose figures, evidence, and main claims are mostly fixed, but subsection flow, paragraph openings, reader guidance, and argumentative progression still feel abrupt, repetitive, or figure-by-figure.

    skills/core/results-section-revision/SKILL.md on GitHub (opens in a new tab)

  • review-article-architecture

    Use when writing, restructuring, or auditing a Review, survey, or Perspective rather than a research article, especially a commissioned one written across many sessions. Covers the governing plan document, drift detection, single-definition thesis and field judgements, section-owns-figure allocation, display-item budgets, four-state status markers, and authorship-blank discipline. For research ar…

    skills/core/review-article-architecture/SKILL.md on GitHub (opens in a new tab)

  • scientific-prose-style

    Prose-quality rules for writing scientific manuscript text: abstract, introduction, results, discussion. The headline rule is a strict em-dash budget: the long dash (—) is overused and reads as a stylistic tic, so cap it and rewrite with commas, colons, parentheses, or a period. Also caps semicolons and colons, the usual replacements, and covers hedging, sentence rhythm, paragraph openers, and AI…

    skills/core/scientific-prose-style/SKILL.md on GitHub (opens in a new tab)

  • scientific-writing

    Use when writing or revising scientific manuscripts, abstracts, figures, or references for journal submission and you need full-paragraph prose, scientific structure, citation-style guidance, or reporting-guideline support.

    skills/core/scientific-writing/SKILL.md on GitHub (opens in a new tab)

  • stats-reporting-audit

    Audit, revise, or draft manuscript statistical reporting for Nature / high-impact journal submissions. Use when the user asks to check statistical analysis sections, p values, confidence intervals, sample size, biological versus technical replicates, randomization, blinding, multiple-comparison correction, model assumptions, figure legends, Results statistics wording, reviewer comments about stat…

    skills/core/stats-reporting-audit/SKILL.md on GitHub (opens in a new tab)

  • submission-audit

    Use when a manuscript is close to submission or resubmission and you need a preflight audit for claim support, figure-panel coverage, legend sync, methods references, terminology stability, and venue-facing risks.

    skills/core/submission-audit/SKILL.md on GitHub (opens in a new tab)

  • write-scientific-manuscript

    Diagnose and repair the clarity and logic of manuscript prose, journal-agnostic. Use when a passage is technically correct but hard to follow: buried topic sentences, missing logical bridges, ambiguous referents, abstract noun chains, overloaded sentences, incomplete comparisons with no stated dataset or metric or direction, scope qualifiers placed too far from the claim, and invented or inflated…

    skills/core/write-scientific-manuscript/SKILL.md on GitHub (opens in a new tab)

  • figure-style

    Publication-grade figure correctness and legibility rules for final-deliverable figures — not every plot. Quick look or iterating on the analysis (EDA scatters, sanity-check histograms)? Plot plainly without this skill. Producing a figure that ships — report, paper, export, or kept artifact — load this skill first and call `apply_figure_style()` — sets a role-mapped font-size ladder, outward tick…

    skills/figure/figure-style/SKILL.md on GitHub (opens in a new tab)

  • nature-figure

    Create, revise, audit or polish submission-grade manuscript figures for Nature-family and other high-impact journals using Python or R. Covers multi-panel scientific plots, matplotlib/seaborn, ggplot2/patchwork/ComplexHeatmap and journal-ready SVG/PDF/TIFF exports. Also use for OpenRouter GPT Image 2 graphical abstracts, concept or mechanism schematics when the user explicitly requests AI generat…

    skills/figure/nature-figure/SKILL.md on GitHub (opens in a new tab)

  • academic-presentations

    Create academic presentation slide decks and optionally demo videos from research papers. Use when the user asks to "make slides", "create a deck", "make a presentation", "demo video", "paper slides", "conference talk slides", or wants to turn a paper into a visual presentation. Covers slide generation, narration scripts, TTS audio, and video assembly.

    skills/optional/academic-presentations/SKILL.md on GitHub (opens in a new tab)

  • conference-paper-writing

    Use when writing or revising ML or AI conference papers for venues such as NeurIPS, ICML, ICLR, ACL, AAAI, or COLM, especially when the workflow is conference-first rather than Nature-style journal-first.

    skills/optional/conference-paper-writing/SKILL.md on GitHub (opens in a new tab)

  • reference-audit-guide

    Verify that cited references actually exist and that their metadata matches, using the runnable scripts this skill ships for CrossRef, Semantic Scholar, arXiv, and PubMed. Use when the bibliography must be checked against live sources rather than inspected locally: detecting fabricated or hallucinated citations, confirming that DOIs resolve, and matching title, authors, venue, and year against th…

    skills/optional/reference-audit-guide/SKILL.md on GitHub (opens in a new tab)

  • academic-researcher

    Use when conducting literature reviews, summarizing papers, comparing methodologies, identifying research gaps, or supporting scholarly writing across disciplines.

    skills/research/academic-researcher/SKILL.md on GitHub (opens in a new tab)

  • paper-analyzer

    Use when deeply analyzing a single paper and producing structured notes on claims, methods, figures, evaluation, strengths, limitations, and related work.

    skills/research/paper-analyzer/SKILL.md on GitHub (opens in a new tab)

  • results-analysis

    Use when analyzing experimental results, validating comparisons, generating paper-ready results text, or turning model-evaluation outputs into figures, tables, and defensible claims.

    skills/research/results-analysis/SKILL.md on GitHub (opens in a new tab)

  • paper-reviewer

    Referee-side skill for Nature Portfolio manuscripts: write a referee report, inventory every ask and sub-ask in received comments, grade drafted replies, and test reply readability. Check methodology, statistics, reporting, reproducibility and data/code availability. Preserve referee wording, numbering and order; require one reply per ask with a direct opening answer and a manuscript location or…

    skills/review/paper-reviewer/SKILL.md on GitHub (opens in a new tab)

  • nature-portfolio-playbook

    Use when choosing among Nature, Nature Methods, or Nature Biotechnology, or when preparing a Nature Portfolio life-science manuscript for venue fit, article-type framing, and policy-aware pre-submission checks.

    skills/venue/nature-portfolio-playbook/SKILL.md on GitHub (opens in a new tab)

Review before you install

A skill is a set of instructions and scripts your agent will follow, and it can run code on your machine. Read the SKILL.md and any scripts first — this listing is not a security review.